WEKO3
アイテム
{"_buckets": {"deposit": "974ecf3b-6f7d-430f-b786-99ee03d929e7"}, "_deposit": {"id": "37037", "owners": [], "pid": {"revision_id": 0, "type": "depid", "value": "37037"}, "status": "published"}, "_oai": {"id": "oai:tsukuba.repo.nii.ac.jp:00037037", "sets": ["1184", "1729", "855", "1051"]}, "item_5_biblio_info_6": {"attribute_name": "書誌情報", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2016-02", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "2", "bibliographicPageEnd": "625", "bibliographicPageStart": "618", "bibliographicVolumeNumber": "276", "bibliographic_titles": [{"bibliographic_title": "Gene"}]}]}, "item_5_creator_3": {"attribute_name": "著者別名", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "岩本, 浩二"}], "nameIdentifiers": [{"nameIdentifier": "126488", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "新家, 弘也"}], "nameIdentifiers": [{"nameIdentifier": "126489", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "白岩, 善博"}], "nameIdentifiers": [{"nameIdentifier": "126490", "nameIdentifierScheme": "WEKO"}]}]}, "item_5_description_4": {"attribute_name": "抄録", "attribute_value_mlt": [{"subitem_description": "Metagenome research has brought much attention for the identification of important and novel genes of industrial and pharmaceutical value. Here, using a metagenome library constructed from bacteria associated with the marine sponge, Styllisa massa, a high-throughput screening technique using radioisotope was implemented to screen for cadmium (Cd) binding or accumulation genes. From a total of 3301 randomly selected clones, a clone 247-11C was identified as harboring an open reading frame (ORF) showing Cd accumulation characteristics. The ORF, termed as ORF5, was further analyzed by protein functional studies to reveal the presence of a protein, Cdae-1. Cdae-1, composed of a signal peptide and domain harboring an E(G/A)KCG pentapeptide motif, enhanced Cd accumulation when expressed in Escherichia coli. Although showing no direct binding to Cd in vitro, the presence of important amino acid residues related to Cd detoxification suggests that Cdae-1 may possess a different mechanism from known Cd binding proteins such as metallothioneins (MTs) and phytochelatins (PCs). In summary, using the advantage of bacterial metagenomes, our findings in this work suggest the first report on the identification of a unique protein involved in Cd accumulation from bacteria associated with a marine sponge.", "subitem_description_type": "Abstract"}]}, "item_5_publisher_27": {"attribute_name": "出版者", "attribute_value_mlt": [{"subitem_publisher": "Elsevier B.V. "}]}, "item_5_relation_11": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "10.1016/j.gene.2015.10.018", "subitem_relation_type_select": "DOI"}}]}, "item_5_rights_12": {"attribute_name": "権利", "attribute_value_mlt": [{"subitem_rights": "© 2015. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ "}]}, "item_5_select_15": {"attribute_name": "著者版フラグ", "attribute_value_mlt": [{"subitem_select_item": "author"}]}, "item_5_source_id_7": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "0378-1119", "subitem_source_identifier_type": "ISSN"}]}, "item_5_source_id_9": {"attribute_name": "書誌レコードID", "attribute_value_mlt": [{"subitem_source_identifier": "AA00654385", "subitem_source_identifier_type": "NCID"}]}, "item_5_subject_20": {"attribute_name": "NIIサブジェクト", "attribute_value_mlt": [{"subitem_subject": "生物学", "subitem_subject_scheme": "Other"}]}, "item_creator": {"attribute_name": "著者", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Mori, Tetsushi"}], "nameIdentifiers": [{"nameIdentifier": "126480", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Iwamoto, Koji"}], "nameIdentifiers": [{"nameIdentifier": "126481", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Wakaoji, Satoshi"}], "nameIdentifiers": [{"nameIdentifier": "126482", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Araie, Hiroya"}], "nameIdentifiers": [{"nameIdentifier": "126483", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Kohara, Yotaro"}], "nameIdentifiers": [{"nameIdentifier": "126484", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Okamura, Yoshiko"}], "nameIdentifiers": [{"nameIdentifier": "126485", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Shiraiwa, Yoshihiro"}], "nameIdentifiers": [{"nameIdentifier": "126486", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Takeyama, Haruko"}], "nameIdentifiers": [{"nameIdentifier": "126487", "nameIdentifierScheme": "WEKO"}]}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2017-03-01"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Gene_576-2.pdf", "filesize": [{"value": "28.0 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensetype": "license_11", "mimetype": "application/pdf", "size": 28000000.0, "url": {"label": "Gene_576-2", "url": "https://tsukuba.repo.nii.ac.jp/record/37037/files/Gene_576-2.pdf"}, "version_id": "65ee2ad2-ce0c-4741-827c-f6c997cfd7c5"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "Characterization of a novel gene involved in cadmium accumulation screened from sponge-associated bacterial metagenome", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "Characterization of a novel gene involved in cadmium accumulation screened from sponge-associated bacterial metagenome"}]}, "item_type_id": "5", "owner": "1", "path": ["1184", "1729", "855", "1051"], "permalink_uri": "http://hdl.handle.net/2241/00135085", "pubdate": {"attribute_name": "公開日", "attribute_value": "2016-02-12"}, "publish_date": "2016-02-12", "publish_status": "0", "recid": "37037", "relation": {}, "relation_version_is_last": true, "title": ["Characterization of a novel gene involved in cadmium accumulation screened from sponge-associated bacterial metagenome"], "weko_shared_id": 5}
Characterization of a novel gene involved in cadmium accumulation screened from sponge-associated bacterial metagenome
http://hdl.handle.net/2241/00135085
http://hdl.handle.net/2241/00135085f8bc3b7d-e3a7-4eb5-b888-e921e7c5c556
名前 / ファイル | ライセンス | アクション |
---|---|---|
Gene_576-2 (28.0 MB)
|
Item type | Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2016-02-12 | |||||
タイトル | ||||||
タイトル | Characterization of a novel gene involved in cadmium accumulation screened from sponge-associated bacterial metagenome | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源 | http://purl.org/coar/resource_type/c_6501 | |||||
タイプ | journal article | |||||
著者 |
Mori, Tetsushi
× Mori, Tetsushi× Iwamoto, Koji× Wakaoji, Satoshi× Araie, Hiroya× Kohara, Yotaro× Okamura, Yoshiko× Shiraiwa, Yoshihiro× Takeyama, Haruko |
|||||
著者別名 |
岩本, 浩二
× 岩本, 浩二× 新家, 弘也× 白岩, 善博 |
|||||
抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | Metagenome research has brought much attention for the identification of important and novel genes of industrial and pharmaceutical value. Here, using a metagenome library constructed from bacteria associated with the marine sponge, Styllisa massa, a high-throughput screening technique using radioisotope was implemented to screen for cadmium (Cd) binding or accumulation genes. From a total of 3301 randomly selected clones, a clone 247-11C was identified as harboring an open reading frame (ORF) showing Cd accumulation characteristics. The ORF, termed as ORF5, was further analyzed by protein functional studies to reveal the presence of a protein, Cdae-1. Cdae-1, composed of a signal peptide and domain harboring an E(G/A)KCG pentapeptide motif, enhanced Cd accumulation when expressed in Escherichia coli. Although showing no direct binding to Cd in vitro, the presence of important amino acid residues related to Cd detoxification suggests that Cdae-1 may possess a different mechanism from known Cd binding proteins such as metallothioneins (MTs) and phytochelatins (PCs). In summary, using the advantage of bacterial metagenomes, our findings in this work suggest the first report on the identification of a unique protein involved in Cd accumulation from bacteria associated with a marine sponge. | |||||
書誌情報 |
Gene 巻 276, 号 2, p. 618-625, 発行日 2016-02 |
|||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 0378-1119 | |||||
書誌レコードID | ||||||
収録物識別子タイプ | NCID | |||||
収録物識別子 | AA00654385 | |||||
DOI | ||||||
識別子タイプ | DOI | |||||
関連識別子 | 10.1016/j.gene.2015.10.018 | |||||
権利 | ||||||
権利情報 | © 2015. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ | |||||
著者版フラグ | ||||||
値 | author | |||||
出版者 | ||||||
出版者 | Elsevier B.V. |